Installed files remain available in pamac manag

Why are the entries …runcated?

Also, the first one I searched for, is in extra repository:

 $ pacman -Ss protonmail-bridge
extra/protonmail-bridge 3.12.0-4
    Integrate ProtonMail paid account with any program that supports IMAP and SMTP (Qt desktop application)
extra/protonmail-bridge-core 3.12.0-4
    Integrate ProtonMail paid account with any program that supports IMAP and SMTP (core executable and
    daemon)

See which ones you need are in the repos, with a suitable version which works for you?

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community repo has been removed for about a year now!

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Exactly; I mentioned the un-maintained state of the system here:

… the OP doesn’t even have the current package for pacdiff present, it seems.

If this command

sudo pacman -Syu pacman-contrib

doesn’t return something like “Already installed. Reinstalling (y/n)” then this system must be significantly out-of-date.

Full output of that command on my system:

Summary
sudo pacman -Syu pacman-contrib
:: Synchronizing package databases...
 core is up to date
 extra is up to date
 multilib is up to date
warning: pacman-contrib-1.10.6-1 is up to date -- reinstalling
:: Starting full system upgrade...
resolving dependencies...
looking for conflicting packages...

Packages (1) pacman-contrib-1.10.6-1

Total Installed Size:  0.12 MiB
Net Upgrade Size:      0.00 MiB

:: Proceed with installation? [Y/n] n
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These two are Freedesktop
Fre… …sktop.Platform freedesktop-sdk-22.08.27 22.08 system
Fre… …sktop.Platform freedesktop-sdk-24.08.2 24.08 system

These are gnome platform files
GNO… …gnome.Platform 42 system
GNO… …gnome.Platform 44 system
GNO… …gnome.Platform 46 system

I have no idea why truncated

Looks like another person has a similar problem

No, the quoted user has updates available which are always listed a updates.
This thread is about left-over Flatpak runtimes which are not removed recursively.

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Now I am down to 2 files after this command
sudo flatpak repair

then I used pamac to remove these 2 and they left

Problem resolved

Thank you for all help!

maclean has

if [[ -d ~/.local/share/flatpak ]]; then
                echo -ne "\nClean user flatpaks (y/N)? "

                read -r response
                if [[ $response =~ ^(yes|y|Y|Yes)$ ]]; then
                    flatpak uninstall --unused --user
                    flatpak repair --user ;
                else
                    echo -ne "Skipped\n"
                fi
            fi

            if [[ -d /etc/flatpak/installations.d || -d /var/lib/flatpak ]]; then
                echo -ne "\nClean system flatpaks (y/N)? "

                read -r response
                if [[ $response =~ ^(yes|y|Y|Yes)$ ]]; then

                    flatpak uninstall --unused ;
                    sudo flatpak repair ;
                else
                    echo -e "Skipped\n"
                fi
            fi

            if [[ -d ~/.var/app ]]; then
                echo -e "\nClear flatpak application data (y/N)? "

                read -r response
                if [[ $response =~ ^(yes|y|Y|Yes)$ ]]; then
                    flatpak uninstall --delete-data ;
                else
                    echo -e "Skipped\n"
                fi
            fi

For flatpaks … which can be shortened to

flatpak uninstall --unused --user
flatpak repair --user 
flatpak uninstall --unused 
sudo flatpak repair 
flatpak uninstall --delete-data
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all six are back!

I tried cscs idea, but no sucess

You could just ignore pamac-manager and disable Flatpak support there.

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I use Flatpak for GNU Cash & Proton Mail Bridge, so I do not want to get rid of it completely. But it is tempting.

Don’t ignore Flatpak but the integration in pamac.

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Just to note, regarding the flatpak updates remaining visible in Pamac’s GUI, an old topic has a solution that seems to work:

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This seems to have worked. Thank you!

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