Yes I used pip to install some python modules.
Remove those then.
Do I have to remove them all even if still need some of them?
Check 2nd post. You should remove any of those.
Sorry what do you mean ?
Ah ok I get it!
If you have installed to system python - all you have used must be removed and installed using pacman.
1 Like
How to remove pip installed packages without system packages being affected ?
Why would system packages be affected…unless you used sudo pip? Just reinstall system ones afterwards then.
Yes indeed I used sudo pip install.
Is there another way to proceed apart from sudo pip uninsall ...?
What’s wrong with sudo pip uninstall? You could overwrite everything, but that is the worse way.
Should I go ahead with sudo pip freeeze | xargs pip uninstall -y --break-system-packages ???
I’m not using pip so I have no idea.
Can you post output of
sudo pip freeze
pip freeze output:
annotated-types==0.6.0
apparmor==3.1.6
appdirs==1.4.4
arandr==0.1.11
argcomplete==2.0.0
asttokens==2.4.1
attrs==23.1.0
autocommand==2.2.2
autopep8==2.0.4
bcrypt==4.1.2
beautifulsoup4==4.12.2
btrfsutil==6.6.3
CacheControl==0.13.1
certifi==2023.11.17
cffi==1.16.0
chardet==5.2.0
charset-normalizer==3.3.2
colorama==0.4.6
comm==0.2.0
coverage==6.5.0
cryptography==41.0.7
cssselect==1.2.0
dbus-python==1.3.2
debugpy==1.8.0
decorator==5.1.1
distro==1.8.0
dnspython==2.4.2
docopt==0.6.2
entrypoints==0.4
evillimiter==1.5.0
executing==2.0.0
fastjsonschema==2.19.1
filelock==3.13.1
flake8==6.1.0
gpg==1.23.2
graphviz==0.20.1
gufw==24.4.0
idna==3.5
importlib-metadata==5.0.0
inflect==7.0.0
ipykernel==6.28.0
ipython==8.19.0
ipython-genutils==0.2.0
jaraco.classes==3.3.0
jaraco.context==4.3.0
jaraco.functools==3.9.0
jaraco.text==3.11.1
jedi==0.19.1
jeepney==0.8.0
Jinja2==3.1.2
jupyter-console==6.6.3
jupyter_client==8.6.0
jupyter_core==5.6.0
keyring==24.3.0
keyutils==0.6
LibAppArmor==3.1.6
lockfile==0.12.2
lxml==4.9.2
MarkupSafe==2.1.3
matplotlib-inline==0.1.6
mccabe==0.7.0
more-itertools==10.1.0
msgpack==1.0.5
nest-asyncio==1.5.7
netaddr==0.8.0
netifaces==0.11.0
netsnmp-python==1.0a1
nftables==0.1
npyscreen==4.10.5
numpy==1.26.2
onboard==1.4.1
ordered-set==4.1.0
packaging==23.2
pacman_mirrors==4.24.0
parso==0.8.3
pexpect==4.9.0
pickleshare==0.7.5
Pillow==10.1.0
platformdirs==4.1.0
ply==3.11
prompt-toolkit==3.0.43
proton-client==0.7.1
protonvpn-cli==3.13.0
protonvpn-gui==1.12.0
protonvpn-nm-lib==3.16.0
psutil==5.9.6
ptyprocess==0.7.0
pure-eval==0.2.2
pycairo==1.25.1
pycodestyle==2.11.1
pycparser==2.21
pycryptodomex==3.12.0
pydantic==2.5.2
pydantic_core==2.14.5
pyflakes==3.1.0
Pygments==2.17.2
PyGObject==3.46.0
pyOpenSSL==23.3.0
PyQt5==5.15.10
PyQt5-sip==12.13.0
PyQt6==6.6.1
PyQt6-sip==13.6.0
pyserial==3.5
PySocks==1.7.1
python-dateutil==2.8.2
python-gnupg==0.5.2
pythondialog==3.5.3
pyxdg==0.28
PyYAML==6.0.1
pyzmq==25.1.2
qtconsole==5.5.1
QTermWidget==1.4.0
QtPy==2.4.0
Quamash==0.6.1
requests==2.31.0
scapy==2.5.0
scour==0.38.2
SecretStorage==3.3.3
simplejson==3.19.2
six==1.16.0
smbus==1.1
soupsieve==2.5
stack-data==0.6.3
systemd-python==235
terminaltables==3.1.0
tomli==2.0.1
torbrowser-launcher==0.3.6
tornado==6.3.2
tqdm==4.66.1
traitlets==5.14.0
trove-classifiers==2023.12.1
typing_extensions==4.9.0
udiskie==2.5.1
ufw==0.36.2
urllib3==1.26.18
validate-pyproject==0.13.post1.dev0+gb752273.d20230520
wcwidth==0.2.12
zipp==3.17.0
zstandard==0.22.0
What happens if you just reinstall jupyter-console
pacman -Syu jupyter-console
Nothing new, same issue.
Please post full output of reinstall.
Sorry!
reinstall output:
: Synchronizing package databases...
core is up to date
extra is up to date
community is up to date
multilib is up to date
warning: jupyter-console-6.6.3-2 is up to date -- reinstalling
:: Starting full system upgrade...
resolving dependencies...
looking for conflicting packages...
Packages (1) jupyter-console-6.6.3-2
Total Installed Size: 0,19 MiB
Net Upgrade Size: 0,00 MiB
:: Proceed with installation? [Y/n] y
(1/1) checking keys in keyring [#######################################################] 100%
(1/1) checking package integrity [#######################################################] 100%
(1/1) loading package files [#######################################################] 100%
(1/1) checking for file conflicts [#######################################################] 100%
(1/1) checking available disk space [#######################################################] 100%
:: Processing package changes...
(1/1) reinstalling jupyter-console [#######################################################] 100%
:: Running post-transaction hooks...
(1/1) Arming ConditionNeedsUpdate...
Eh…
Looking at this now: https://unix.stackexchange.com/questions/444195/pip-freeze-lists-packages-uninstalled-through-pip-then-reinstalled-through-pacm
Can you try running that script and posting output here:
wget https://gist.github.com/hoefling/314565368a66c308b4d7d407a3028cb7/raw/7b81553fa0a84b92a90fbaa0746482d0ec18516c/pip-query -O pip-query
chmod +x pip-query
./pip-query
pip-query script output:
[hafid@hafid-hp temp_jupyter-console_fix]$ ./pip-query
/home/hafid/temp_jupyter-console_fix/./pip-query:7: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html
import pkg_resources
Package Version Owner
------------------- ---------------------------------- -------------------------
Jinja2 3.1.2 python-jinja
LibAppArmor 3.1.6 apparmor
MarkupSafe 2.1.3 python-markupsafe
Pillow 10.1.0 python-pillow
PyGObject 3.46.0 python-gobject
PyQt5 5.15.10 python-pyqt5
PyQt5-sip 12.13.0 python-pyqt5-sip
PyQt6 6.6.1 python-pyqt6
PyQt6-sip 13.6.0 python-pyqt6-sip
PySocks 1.7.1 python-pysocks
PyYAML 6.0.1 python-yaml
QTermWidget 1.4.0 qtermwidget
QtPy 2.4.0 python-qtpy
Quamash 0.6.1 python-quamash-git
SecretStorage 3.3.3 python-secretstorage
annotated-types 0.6.0 python-annotated-types
apparmor 3.1.6 apparmor
appdirs 1.4.4 python-appdirs
arandr 0.1.11 arandr
argcomplete 2.0.0 python-argcomplete
asttokens 2.4.1 python-asttokens
attrs 23.1.0 python-attrs
autocommand 2.2.2 python-autocommand
autopep8 2.0.4 autopep8
bcrypt 4.1.2 python-bcrypt
beautifulsoup4 4.12.2 python-beautifulsoup4
btrfsutil 6.6.3 btrfs-progs
cachecontrol 0.13.1 python-cachecontrol
certifi 2023.11.17 python-certifi
cffi 1.16.0 python-cffi
chardet 5.2.0 python-chardet
charset-normalizer 3.3.2 python-charset-normalizer
colorama 0.4.6 python-colorama
comm 0.2.0 python-comm
coverage 6.5.0 python-coverage
cryptography 41.0.7 python-cryptography
cssselect 1.2.0 python-cssselect
dbus-python 1.3.2 dbus-python
debugpy 1.8.0 python-debugpy
decorator 5.1.1 python-decorator
distro 1.8.0 python-distro
dnspython 2.4.2 python-dnspython
docopt 0.6.2 python-docopt
entrypoints 0.4 python-entrypoints
evillimiter 1.5.0 evillimiter
executing 2.0.0 python-executing
fastjsonschema 2.19.1 python-fastjsonschema
filelock 3.13.1 python-filelock
flake8 6.1.0 flake8
gpg 1.23.2 python-gpgme
graphviz 0.20.1 python-graphviz
gufw 24.4.0 gufw
idna 3.5 python-idna
importlib-metadata 5.0.0 python-importlib-metadata
inflect 7.0.0 python-inflect
ipykernel 6.28.0 python-ipykernel
ipython 8.19.0 ipython
ipython-genutils 0.2.0 python-ipython-genutils
jaraco.classes 3.3.0 python-jaraco.classes
jaraco.context 4.3.0 python-jaraco.context
jaraco.functools 3.9.0 python-jaraco.functools
jaraco.text 3.11.1 python-jaraco.text
jedi 0.19.1 python-jedi
jeepney 0.8.0 python-jeepney
jupyter-client 8.6.0 python-jupyter-client
jupyter-console 6.6.3 jupyter-console
jupyter-core 5.6.0 python-jupyter-core
keyring 24.3.0 python-keyring
keyutils 0.6 python-keyutils
lockfile 0.12.2 python-lockfile
lxml 4.9.2 python-lxml
matplotlib-inline 0.1.6 python-matplotlib-inline
mccabe 0.7.0 python-mccabe
more-itertools 10.1.0 python-more-itertools
msgpack 1.0.5 python-msgpack
nest-asyncio 1.5.7 python-nest-asyncio
netaddr 0.8.0 python-netaddr
netifaces 0.11.0 python-netifaces
netsnmp-python 1.0a1 net-snmp
nftables 0.1 nftables
npyscreen 4.10.5 python-npyscreen
numpy 1.26.2 python-numpy
onboard 1.4.1 onboard
ordered-set 4.1.0 python-ordered-set
packaging 23.2 python-packaging
pacman-mirrors 4.24.0 pacman-mirrors
parso 0.8.3 python-parso
pexpect 4.9.0 python-pexpect
pickleshare 0.7.5 python-pickleshare
pip 23.3.2 python-pip
platformdirs 4.1.0 python-platformdirs
ply 3.11 python-ply
prompt-toolkit 3.0.43 python-prompt_toolkit
proton-client 0.7.1 python-proton-client
protonvpn-cli 3.13.0 protonvpn-cli
protonvpn-gui 1.12.0 protonvpn-gui
protonvpn-nm-lib 3.16.0 python-protonvpn-nm-lib
psutil 5.9.6 python-psutil
ptyprocess 0.7.0 python-ptyprocess
pure-eval 0.2.2 python-pure-eval
pyOpenSSL 23.3.0 python-pyopenssl
pycairo 1.25.1 python-cairo
pycodestyle 2.11.1 python-pycodestyle
pycparser 2.21 python-pycparser
pycryptodomex 3.12.0 python-pycryptodomex
pydantic 2.5.2 python-pydantic
pydantic-core 2.14.5 python-pydantic-core
pyflakes 3.1.0 python-pyflakes
pygments 2.17.2 python-pygments
pyserial 3.5 python-pyserial
python-dateutil 2.8.2 python-dateutil
python-gnupg 0.5.2 python-gnupg
pythondialog 3.5.3 python-pythondialog
pyxdg 0.28 python-pyxdg
pyzmq 25.1.2 python-pyzmq
qtconsole 5.5.1 python-qtconsole
requests 2.31.0 python-requests
scapy 2.5.0 python-scapy
scour 0.38.2 scour
setuptools 69.0.3 python-setuptools
simplejson 3.19.2 python-simplejson
six 1.16.0 python-six
smbus 1.1 i2c-tools
soupsieve 2.5 python-soupsieve
stack-data 0.6.3 python-stack-data
systemd-python 235 python-systemd
terminaltables 3.1.0 python-terminaltables
tomli 2.0.1 python-tomli
torbrowser-launcher 0.3.6 torbrowser-launcher
tornado 6.3.2 python-tornado
tqdm 4.66.1 python-tqdm
traitlets 5.14.0 python-traitlets
trove-classifiers 2023.12.1 python-trove-classifiers
typing-extensions 4.9.0 python-typing_extensions
udiskie 2.5.1 udiskie
ufw 0.36.2 ufw
urllib3 1.26.18 python-urllib3
validate-pyproject 0.13.post1.dev0+gb752273.d20230520 python-validate-pyproject
wcwidth 0.2.12 python-wcwidth
wheel 0.42.0 python-wheel
zipp 3.17.0 python-zipp
zstandard 0.22.0 python-zstandard
Well… it looks fine.
Now only two things that still come to mind…
- Try uninstall and reinstall with
pacman -Rns jupyter-console && pacman -S jupyter-console
and/or
- switch to unstable branch or wait for another stable update – if newer versions of ipython and some other packages will fix it.