Force update or complete wipe?

Support
1

Hai. Due to recent failed updates due one dependency (youtube-music-git and proton 22) blocking updates I decided to wait a little too long. Now I’m willing to wipe everything unless I can update.

pacman -Syu couldn’t do it. Solved by removing youtube-music-git. Then failed.
pacman -Syyu failed as well. I also resorted to pacman -Syuu no dice.
Trying pacman -Syyuu but I think the result will be the same. Here are the errors

:: Proceed with installation? [Y/n] Y
(904/904) checking keys in keyring                             [##################################] 100%
(904/904) checking package integrity                           [##################################] 100%
(904/904) loading package files                                [##################################] 100%
(904/904) checking for file conflicts                          [##################################] 100%
error: failed to commit transaction (conflicting files)
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npm: /usr/lib/node_modules/npm/node_modules/sigstore/dist/tlog/index.d.ts exists in filesystem
npm: /usr/lib/node_modules/npm/node_modules/sigstore/dist/tlog/index.js exists in filesystem
npm: /usr/lib/node_modules/npm/node_modules/sigstore/dist/tlog/verify/body.d.ts exists in filesystem
npm: /usr/lib/node_modules/npm/node_modules/sigstore/dist/tlog/verify/body.js exists in filesystem
npm: /usr/lib/node_modules/npm/node_modules/sigstore/dist/tlog/verify/index.d.ts exists in filesystem
npm: /usr/lib/node_modules/npm/node_modules/sigstore/dist/tlog/verify/index.js exists in filesystem
npm: /usr/lib/node_modules/npm/node_modules/sigstore/dist/tlog/verify/set.d.ts exists in filesystem
npm: /usr/lib/node_modules/npm/node_modules/sigstore/dist/tlog/verify/set.js exists in filesystem
npm: /usr/lib/node_modules/npm/node_modules/sigstore/dist/types/signature.d.ts exists in filesystem
npm: /usr/lib/node_modules/npm/node_modules/sigstore/dist/types/signature.js exists in filesystem
npm: /usr/lib/node_modules/npm/node_modules/sigstore/dist/types/sigstore/index.d.ts exists in filesystem
npm: /usr/lib/node_modules/npm/node_modules/sigstore/dist/types/sigstore/index.js exists in filesystem
npm: /usr/lib/node_modules/npm/node_modules/sigstore/dist/types/sigstore/serialized.d.ts exists in filesystem
npm: /usr/lib/node_modules/npm/node_modules/sigstore/dist/types/sigstore/serialized.js exists in filesystem
npm: /usr/lib/node_modules/npm/node_modules/sigstore/dist/types/sigstore/validate.d.ts exists in filesystem
npm: /usr/lib/node_modules/npm/node_modules/sigstore/dist/types/sigstore/validate.js exists in filesystem
npm: /usr/lib/node_modules/npm/node_modules/sigstore/dist/types/utility.d.ts exists in filesystem
npm: /usr/lib/node_modules/npm/node_modules/sigstore/dist/types/utility.js exists in filesystem
npm: /usr/lib/node_modules/npm/node_modules/sigstore/dist/util/crypto.d.ts exists in filesystem
npm: /usr/lib/node_modules/npm/node_modules/sigstore/dist/util/crypto.js exists in filesystem
npm: /usr/lib/node_modules/npm/node_modules/sigstore/dist/util/dsse.d.ts exists in filesystem
npm: /usr/lib/node_modules/npm/node_modules/sigstore/dist/util/dsse.js exists in filesystem
npm: /usr/lib/node_modules/npm/node_modules/sigstore/dist/util/encoding.d.ts exists in filesystem
npm: /usr/lib/node_modules/npm/node_modules/sigstore/dist/util/encoding.js exists in filesystem
npm: /usr/lib/node_modules/npm/node_modules/sigstore/dist/util/index.d.ts exists in filesystem
npm: /usr/lib/node_modules/npm/node_modules/sigstore/dist/util/index.js exists in filesystem
npm: /usr/lib/node_modules/npm/node_modules/sigstore/dist/util/json.d.ts exists in filesystem
npm: /usr/lib/node_modules/npm/node_modules/sigstore/dist/util/json.js exists in filesystem
npm: /usr/lib/node_modules/npm/node_modules/sigstore/dist/util/oidc.d.ts exists in filesystem
npm: /usr/lib/node_modules/npm/node_modules/sigstore/dist/util/oidc.js exists in filesystem
npm: /usr/lib/node_modules/npm/node_modules/sigstore/dist/util/pem.d.ts exists in filesystem
npm: /usr/lib/node_modules/npm/node_modules/sigstore/dist/util/pem.js exists in filesystem
npm: /usr/lib/node_modules/npm/node_modules/sigstore/dist/util/promise.d.ts exists in filesystem
npm: /usr/lib/node_modules/npm/node_modules/sigstore/dist/util/promise.js exists in filesystem
npm: /usr/lib/node_modules/npm/node_modules/sigstore/dist/util/stream.d.ts exists in filesystem
npm: /usr/lib/node_modules/npm/node_modules/sigstore/dist/util/stream.js exists in filesystem
npm: /usr/lib/node_modules/npm/node_modules/sigstore/dist/util/ua.d.ts exists in filesystem
npm: /usr/lib/node_modules/npm/node_modules/sigstore/dist/util/ua.js exists in filesystem
npm: /usr/lib/node_modules/npm/node_modules/sigstore/dist/verify.d.ts exists in filesystem
npm: /usr/lib/node_modules/npm/node_modules/sigstore/dist/verify.js exists in filesystem
npm: /usr/lib/node_modules/npm/node_modules/sigstore/dist/x509/cert.d.ts exists in filesystem
npm: /usr/lib/node_modules/npm/node_modules/sigstore/dist/x509/cert.js exists in filesystem
npm: /usr/lib/node_modules/npm/node_modules/sigstore/dist/x509/ext.d.ts exists in filesystem
npm: /usr/lib/node_modules/npm/node_modules/sigstore/dist/x509/ext.js exists in filesystem
npm: /usr/lib/node_modules/npm/node_modules/sigstore/dist/x509/sct.d.ts exists in filesystem
npm: /usr/lib/node_modules/npm/node_modules/sigstore/dist/x509/sct.js exists in filesystem
npm: /usr/lib/node_modules/npm/node_modules/sigstore/dist/x509/verify.d.ts exists in filesystem
npm: /usr/lib/node_modules/npm/node_modules/sigstore/dist/x509/verify.js exists in filesystem
npm: /usr/lib/node_modules/npm/node_modules/sigstore/package.json exists in filesystem
npm: /usr/lib/node_modules/npm/node_modules/tar/node_modules/fs-minipass/LICENSE exists in filesystem
npm: /usr/lib/node_modules/npm/node_modules/tar/node_modules/fs-minipass/index.js exists in filesystem
npm: /usr/lib/node_modules/npm/node_modules/tar/node_modules/fs-minipass/node_modules/minipass/LICENSE exists in filesystem
npm: /usr/lib/node_modules/npm/node_modules/tar/node_modules/fs-minipass/node_modules/minipass/index.js exists in filesystem
npm: /usr/lib/node_modules/npm/node_modules/tar/node_modules/fs-minipass/node_modules/minipass/package.json exists in filesystem
npm: /usr/lib/node_modules/npm/node_modules/tar/node_modules/fs-minipass/package.json exists in filesystem
npm: /usr/lib/node_modules/npm/node_modules/tuf-js/LICENSE exists in filesystem
npm: /usr/lib/node_modules/npm/node_modules/tuf-js/dist/config.js exists in filesystem
npm: /usr/lib/node_modules/npm/node_modules/tuf-js/dist/error.js exists in filesystem
npm: /usr/lib/node_modules/npm/node_modules/tuf-js/dist/fetcher.js exists in filesystem
npm: /usr/lib/node_modules/npm/node_modules/tuf-js/dist/index.js exists in filesystem
npm: /usr/lib/node_modules/npm/node_modules/tuf-js/dist/store.js exists in filesystem
npm: /usr/lib/node_modules/npm/node_modules/tuf-js/dist/updater.js exists in filesystem
npm: /usr/lib/node_modules/npm/node_modules/tuf-js/dist/utils/tmpfile.js exists in filesystem
npm: /usr/lib/node_modules/npm/node_modules/tuf-js/package.json exists in filesystem
npm: /usr/lib/node_modules/npm/node_modules/which/bin/which.js exists in filesystem
npm: /usr/lib/node_modules/npm/node_modules/which/lib/index.js exists in filesystem
Errors occurred, no packages were upgraded.

Any idea how to solve this? Should I nuke and start all over again?

1 Like
2

Try

sudo pacman -Syu --overwrite '/usr/*'

edit: i have forgotten the quotes initially

2 Likes
3

This. :point_up:

And don’t use sudo to install npm packages in the future.

2 Likes
4

@mithrial Sorry but I have no idea what I did to Manjaro in order to install those.
The only real packages I need with high privileges would be Sidewinderd and Input Remapper, perhaps VMM KVM/QEMU but nothing else. Everything else should be just plain Software installer packages.

@Teo Thanks for the support. I tried it and got this:

:: Synchronizing package databases...
 core is up to date
 extra                   8.6 MiB  2.25 MiB/s 00:04 [######################] 100%
 community is up to date
 multilib              146.5 KiB   239 KiB/s 00:01 [######################] 100%
error: target not found: /usr/include
warning: '/usr/include' is a file, did you mean -U/--upgrade instead of -S/--sync?
error: target not found: /usr/lib
warning: '/usr/lib' is a file, did you mean -U/--upgrade instead of -S/--sync?
error: target not found: /usr/lib32
warning: '/usr/lib32' is a file, did you mean -U/--upgrade instead of -S/--sync?
error: target not found: /usr/lib64
warning: '/usr/lib64' is a file, did you mean -U/--upgrade instead of -S/--sync?
error: target not found: /usr/local
warning: '/usr/local' is a file, did you mean -U/--upgrade instead of -S/--sync?
error: target not found: /usr/sbin
warning: '/usr/sbin' is a file, did you mean -U/--upgrade instead of -S/--sync?
error: target not found: /usr/share
warning: '/usr/share' is a file, did you mean -U/--upgrade instead of -S/--sync?
error: target not found: /usr/src
warning: '/usr/src' is a file, did you mean -U/--upgrade instead of -S/--sync?

Sorry but I’m new to this GNU/Linux ways :smiling_face_with_tear:

5

Then try the hammer:

sudo pacman-mirrors -f && sudo pacman -Syyuu --overwrite '*'

Make sure to use exactly the above syntax.

2 Likes
6

It looks like your filesystem was hosed somehow. Considering that you’re open to reinstalling, I would propose you do that.

7

No no, this is because of the unescaped glob /usr/* from the command in post 2.

1 Like
8

Thank you! That sure did it. Full update to Manjaro.

Still having issues with some apps but everything looks somewhat stable.
Really thankfull for the support. Case closed and have a wonderfull week. Cheers!

1 Like
9

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