After upgrade unable to login to session

[RonaldDuncan]

Get red message
Failed to Start Session

journalctl just shows
lightdm[870]: gkr-pam: unable to locate daemon control file

I can ssh in and can access via terminal

Had a look in /var/log/lightdm

[+110.00s] DEBUG: Seat seat0: Failed to find session configuration xfce
[+110.00s] DEBUG: Seat seat0: Can’t find session ‘xfce’

Looking at my working install the log is as follows
[+30.65s] DEBUG: Greeter sets language en_GB.utf8
[+30.67s] DEBUG: Greeter requests session xfce
[+30.67s] DEBUG: Seat seat0: Stopping greeter; display server will be re-used for user session

The failing install that was upgraded with a disk issue and then successfully upgraded after clearing space
[+9.44s] DEBUG: Greeter sets language en_GB.utf8
[+9.48s] DEBUG: Greeter requests default session
[+9.48s] DEBUG: Seat seat0: Failed to find session configuration xfce
[+9.48s] DEBUG: Seat seat0: Can’t find session ‘xfce’

I copied over the working config and then diffed the config for lightdm only difference was logind-check-graphical.

diff /etc/lightdm/lightdm.conf ./lightdm.conf
30c30
< #logind-check-graphical=false
---
> logind-check-graphical=true

diff /etc/lightdm/lightdm.conf.pacnew ./lightdm.conf.pacnew
same
diff /etc/lightdm/lightdm-gtk-greeter.conf ./lightdm-gtk-greeter.conf 
14c14
< clock-format =
---
> clock-format = 
16a17,18
> allow-debugging = true
> 
diff /etc/lightdm/users.conf ./users.conf
same

[zbe]

You don’t have to post 10 posts in succession. You can edit the first one and put everything there. Also learn how to use preformatted text, because your text is unreadable. I mean, just look at your own posts.

[freggel.doe]

Please heed @zbe’s advice regarding posting.

@RonaldDuncan

diff /etc/lightdm/lightdm.conf.pacnew ./lightdm.conf.pacnew
same

That’s unhelpful to say the least - you need to check the diff of the pacnew file to the currently active config:

$ diff -u /etc/lightdm/lightdm.conf /etc/lightdm/lightdm.conf.pacnew

[RonaldDuncan]

Thanks for the help with posting format. The diffs were between a working install and the broken install. Thanks for the advice about comparing lightdm.conf and lightdm.conf.pacnew. In the meantime I had reinstalled xfce4.

I ended up using

sudo pacman -S xfce4 --overwrite "*"

Which got the session working again.

However it wiped out the Manjaro start icon on the panel and terminal is not working.

The machine is a mess, since it will not allow me to change kernel, and does not show up new kernel installs.

I can ssh into it so I should be able to get the files off to a different machine.

Any ideas on how to clean up the xfce4 install so that things like terminal work would be appreciated.

I can still ssh into the machine, and CTL + ALT + F2 works to get a local tty

[cscs]

This is not a fix for everything.
But if you want to reinstall all the standard packages you can use mapare;

bash <(curl -s https://gitlab.com/cscs/mapare/-/raw/main/mapare) -IA

And type xfce at the prompt.

When it comes to handling pacnews … here is my suggestion:

Continuing the discussion from Why is the community repo missing?:

@cscs

The fast and correct way, including my own opinions, would be

Ensure meld is installed

sudo pacman -Syu meld

Set the DIFFPROG environment variable

echo "DIFFPROG=/usr/bin/meld" | sudo tee -a /etc/environment

Source the environment file to be sure

source /etc/environment

Run pacdiff

pacdiff -s

Use ‘v’ to view, compare, edit, and merge new code.

(note the same file will be presented again after merge/save/close … if satisfied with the marge you can then ‘r’ for remove. Or just ‘s’ to skip … retaining the file for next pacdiff check, such as after a reboot)

The focus is to preserve configurations while adding in the new standards.

[RonaldDuncan]

@cscs

bash <(curl -s https://gitlab.com/cscs/mapare/-/raw/main/mapare) -IA

Thanks tried it got response

Please provide desktop environment (kde,xfce,gnome): xfce
:: Synchronising package databases...
 core is up to date
 extra is up to date
 community is up to date
 multilib is up to date
:: Starting full system upgrade...
 there is nothing to do

Key problem I have is getting xfce4-terminal working again.

It has an Input-Output Error.
And I need it working for user who has a meeting tomorrow morning.

[cscs]

You definitely still have pacnews to handle, as the [community] repo has been deprecated for a long while.

There may or may not be something related in them - /etc/shells, pam things, etc.

(and I am not sure if the continued existence of [community] may hinder upgrades)

Is there any way we can get the errors being produced?
And/or can you install/launch any other terminal?

And what about the kernels?

uname -a

mhwd-kernel -li

inxi -Fazy

(if you are stuck on an old unsupported kernel that could be causing problems as well)

[RonaldDuncan]

@cscs

uname -a

uname -a
Linux ronald-nuc8i 5.14.10-1-MANJARO #1 SMP PREEMPT Thu Oct 7 06:43:34 UTC 2021 x86_64 GNU/Linux

5.14.10-1-MANJARO (linux514)
The following kernels are installed in your system:
   * linux514
   * linux66

It will only boot into 5.14 – it did have 6.1 but that kernel is broken in this install.

inxi -Fazy
System:
  Kernel: 5.14.10-1-MANJARO arch: x86_64 bits: 64 compiler: gcc v: 11.1.0
    clocksource: tsc available: hpet,acpi_pm
    parameters: BOOT_IMAGE=/boot/vmlinuz-5.14-x86_64
    root=UUID=6e48c7f3-4884-4fb2-9a3a-216028f26114 rw quiet apparmor=1
    security=apparmor udev.log_priority=3
  Console: pty pts/0 DM: LightDM v: 1.32.0 Distro: Manjaro Linux
    base: Arch Linux
Machine:
  Type: Desktop System: Intel Client Systems product: NUC8i7BEH v: J72992-304
    serial: <superuser required> Chassis: Intel Corporation type: 3 v: 2.0
    serial: <superuser required>
  Mobo: Intel model: NUC8BEB v: J72688-304 serial: <superuser required>
    UEFI: Intel v: BECFL357.86A.0085.2020.1007.1917 date: 10/07/2020
CPU:
  Info: model: Intel Core i7-8559U bits: 64 type: MT MCP arch: Coffee Lake
    gen: core 8 level: v3 note: check built: 2017 process: Intel 14nm family: 6
    model-id: 0x8E (142) stepping: 0xA (10) microcode: 0xF4
  Topology: cpus: 1x cores: 4 tpc: 2 threads: 8 smt: enabled cache:
    L1: 256 KiB desc: d-4x32 KiB; i-4x32 KiB L2: 1024 KiB desc: 4x256 KiB
    L3: 8 MiB desc: 1x8 MiB
  Speed (MHz): avg: 1376 high: 3306 min/max: 400/4500 scaling:
    driver: intel_pstate governor: powersave cores: 1: 1108 2: 1099 3: 1101
    4: 3306 5: 1100 6: 1100 7: 1100 8: 1100 bogomips: 43214
  Flags: avx avx2 ht lm nx pae sse sse2 sse3 sse4_1 sse4_2 ssse3 vmx
  Vulnerabilities:
  Type: itlb_multihit status: KVM: VMX disabled
  Type: l1tf mitigation: PTE Inversion; VMX: conditional cache flushes, SMT
    vulnerable
  Type: mds mitigation: Clear CPU buffers; SMT vulnerable
  Type: meltdown mitigation: PTI
  Type: spec_store_bypass mitigation: Speculative Store Bypass disabled via
    prctl and seccomp
  Type: spectre_v1 mitigation: usercopy/swapgs barriers and __user pointer
    sanitization
  Type: spectre_v2 mitigation: Full generic retpoline, IBPB: conditional,
    IBRS_FW, STIBP: conditional, RSB filling
  Type: srbds mitigation: Microcode
  Type: tsx_async_abort status: Not affected
Graphics:
  Device-1: Intel CoffeeLake-U GT3e [Iris Plus Graphics 655] driver: i915
    v: kernel arch: Gen-9.5 process: Intel 14nm built: 2016-20 ports:
    active: DP-1 empty: DP-2,HDMI-A-1 bus-ID: 00:02.0 chip-ID: 8086:3ea5
    class-ID: 0300
  Device-2: Microdia USB Live camera driver: snd-usb-audio,uvcvideo type: USB
    rev: 2.0 speed: 480 Mb/s lanes: 1 mode: 2.0 bus-ID: 1-3:4 chip-ID: 0c45:6537
    class-ID: 0102 serial: <filter>
  Display: server: X.org v: 1.21.1.10 driver: X: loaded: modesetting
    alternate: fbdev,vesa dri: iris gpu: i915 tty: 81x42
  Monitor-1: DP-1 model: 43CVSUWD120 serial: <filter> built: 2020
    res: 3840x1200 dpi: 93 gamma: 1.2 size: 1052x329mm (41.42x12.95")
    diag: 1102mm (43.4") modes: max: 3840x1200 min: 720x400
  API: OpenGL Message: GL data unavailable in console, glxinfo missing.
Audio:
  Device-1: Intel Cannon Point-LP High Definition Audio driver: snd_hda_intel
    v: kernel alternate: snd_soc_skl,snd_sof_pci_intel_cnl bus-ID: 00:1f.3
    chip-ID: 8086:9dc8 class-ID: 0403
  Device-2: Microdia USB Live camera driver: snd-usb-audio,uvcvideo type: USB
    rev: 2.0 speed: 480 Mb/s lanes: 1 mode: 2.0 bus-ID: 1-3:4 chip-ID: 0c45:6537
    class-ID: 0102 serial: <filter>
  API: ALSA v: k5.14.10-1-MANJARO status: kernel-api with: aoss
    type: oss-emulator tools: alsactl,alsamixer,amixer
  Server-1: JACK v: 1.9.22 status: off tools: N/A
  Server-2: PipeWire v: 1.0.0 status: off tools: pw-cli
  Server-3: PulseAudio v: 16.1 status: off with: 1: pulseaudio-alsa
    type: plugin 2: pulseaudio-jack type: module tools: pacat,pactl,pavucontrol
Network:
  Device-1: Intel Cannon Point-LP CNVi [Wireless-AC] driver: iwlwifi v: kernel
    bus-ID: 00:14.3 chip-ID: 8086:9df0 class-ID: 0280
  IF: wlp0s20f3 state: down mac: <filter>
  Device-2: Intel Ethernet I219-V driver: e1000e v: kernel port: N/A
    bus-ID: 00:1f.6 chip-ID: 8086:15be class-ID: 0200
  IF: eno1 state: up speed: 1000 Mbps duplex: full mac: <filter>
Bluetooth:
  Device-1: Intel Bluetooth 9460/9560 Jefferson Peak (JfP) driver: btusb v: 0.8
    type: USB rev: 2.0 speed: 12 Mb/s lanes: 1 mode: 1.1 bus-ID: 1-10:6
    chip-ID: 8087:0aaa class-ID: e001
  Report: rfkill ID: hci0 rfk-id: 0 state: down bt-service: enabled,running
    rfk-block: hardware: no software: yes address: see --recommends
Drives:
  Local Storage: total: 1.03 TiB used: 564.78 GiB (53.8%)
  SMART Message: Required tool smartctl not installed. Check --recommends
  ID-1: /dev/sda maj-min: 8:0 vendor: A-Data model: SU800NS38
    size: 119.24 GiB block-size: physical: 512 B logical: 512 B speed: 6.0 Gb/s
    tech: SSD serial: <filter> fw-rev: 7AC scheme: GPT
  ID-2: /dev/sdb maj-min: 8:16 vendor: Seagate model: ST1000LM048-2E7172
    size: 931.51 GiB block-size: physical: 4096 B logical: 512 B speed: 6.0 Gb/s
    tech: HDD rpm: 5400 serial: <filter> fw-rev: SDM1 scheme: MBR
Partition:
  ID-1: / raw-size: 118.95 GiB size: 116.52 GiB (97.96%)
    used: 61.98 GiB (53.2%) fs: ext4 dev: /dev/sda2 maj-min: 8:2
  ID-2: /boot/efi raw-size: 300 MiB size: 299.4 MiB (99.80%)
    used: 280 KiB (0.1%) fs: vfat dev: /dev/sda1 maj-min: 8:1
Swap:
  Alert: No swap data was found.
Sensors:
  System Temperatures: cpu: 44.0 C pch: 45.0 C mobo: N/A
  Fan Speeds (rpm): N/A
Info:
  Processes: 189 Uptime: 8m wakeups: 0 Memory: total: 16 GiB
  available: 15.5 GiB used: 652.8 MiB (4.1%) Init: systemd v: 254
  default: graphical tool: systemctl Compilers: gcc: 13.2.1 clang: 16.0.6
  Packages: pm: pacman pkgs: 1527 libs: 468 tools: pamac pm: flatpak pkgs: 0
  Shell: Bash v: 5.2.21 running-in: pty pts/0 (SSH) inxi: 3.3.31

[cscs]

@RonaldDuncan

Linux ronald-nuc8i 5.14.10-1-MANJARO #1 SMP PREEMPT Thu Oct 7 06:43:34 UTC 2021 x86_64 GNU/Linux

Yeah that would be a problem.
5.14 is not a supported kernel.
And rather old.

If you can … it would be good to at least get some working supported kernel.

sudo mhwd-kernel -i linux515

Or if that does not work

sudo pacman -Syu linux515

While we are here … might as well add the latest tool to keep grub bootloader updated

sudo pacman -Syu install-grub && sudo install-grub

But lets be extra sure

sudo mkinitcpio -P && sudo update-grub

Reboot.
During boot up you should be able to select a kernel from grub … please attempt to boot into 5.15.
(if grub is hidden try hitting Shift)

If we can get into 5.15 then we want to start purging 5.14

sudo mhwd-kernel -r linux514

Or if mhwd-kernel does not work

sudo pacman -Rns $(pacman -Qsq linux514)

(and if you say 6.1 is broken then do the same with it)

PS

@RonaldDuncan

Machine:
  Type: Desktop System: Intel Client Systems product: NUC8i7BEH v: J72992-304
    serial: <superuser required> Chassis: Intel Corporation type: 3 v: 2.0
    serial: <superuser required>
  Mobo: Intel model: NUC8BEB v: J72688-304 serial: <superuser required>
    UEFI: Intel v: BECFL357.86A.0085.2020.1007.1917 date: 10/07/2020

BIOS is out of date. From my search
https://www.intel.com/content/www/us/en/products/sku/126140/intel-nuc-kit-nuc8i7beh/downloads.html

[RonaldDuncan]

Thanks,
Downloading an updated BIOS, and trying to get back the boot options.
It looks like the grub config has updated, but it hung on.

sudo mkinitcpio -P && sudo update-grub
==> Building image from preset: /etc/mkinitcpio.d/linux514.preset: 'default'
==> Using configuration file: '/etc/mkinitcpio.conf'
  -> -k /boot/vmlinuz-5.14-x86_64 -c /etc/mkinitcpio.conf -g /boot/initramfs-5.14-x86_64.img
==> Starting build: '5.14.10-1-MANJARO'
  -> Running build hook: [base]
  -> Running build hook: [udev]
  -> Running build hook: [autodetect]
  -> Running build hook: [modconf]
  -> Running build hook: [block]
  -> Running build hook: [keyboard]
  -> Running build hook: [keymap]
  -> Running build hook: [lvm2]
  -> Running build hook: [filesystems]
==> Generating module dependencies
==> Creating gzip-compressed initcpio image: '/boot/initramfs-5.14-x86_64.img'

Stuck at this point. However the 6.6 kernel was found, and hopefully will be on the grub menu when I reboot. Going to give it a while to see if it continues… with building the kernel image.
I am creating a new install USB, so I can install on a different machine, whilst trying to get this one back.

[cscs]

Ouch, but it is the flaky old 5.14
The -P flag tries to build all images.
Instead you can use -p and name the others;

sudo mkinitcpio -p linux515

(etc for any other installed kernels?)
After building the images you want to run update-grub

sudo update-grub

PS.
If you wish for a menu at every start be sure to check /etc/default/grub for options

• GRUB_TIMEOUT = number greater than 0
• GRUB_TIMEOUT_STYLE = menu

(changes to the file must be followed by update-grub as above)

[RonaldDuncan]

It is now on 6.6 with a back up of 6.1.

However the terminal problem is still the same on 6.6.

The install-grub managed to pick up 6.6 so I managed to move up kernel, before mkinitcpio failed.

[cscs]

Ah well thats something.

So are you only able to execute commands in TTY? Or what are you using?

Oh if its the same as above you are sshing in?

A sort of workaround for the moment may be to try to install another terminal;

sudo pacman -Syu mate-terminal

[RonaldDuncan]

@cscs

sudo pacman -Syu mate-terminal

Great idea. Tried it and had following errors

lots of empty file warnings
…

ldconfig: File /usr/lib/libzita-resampler.so.1.11.2 is empty, not checked.
ldconfig: File /usr/lib/libhandle.so.1.0.3 is empty, not checked.
:: Running post-transaction hooks...
(1/4) Arming ConditionNeedsUpdate...
(2/4) Compiling GSettings XML schema files...
/usr/share/glib-2.0/schemas/org.gnome.yelp.gschema.xml:1:1  Error on line 1 char 1: Document was empty or contained only whitespace.  This entire file has been ignored.
/usr/share/glib-2.0/schemas/org.x.apps.gschema.xml:1:1  Error on line 1 char 1: Document was empty or contained only whitespace.  This entire file has been ignored.
/usr/share/glib-2.0/schemas/xdg-desktop-portal-gnome.gschema.xml:1:1  Error on line 1 char 1: Document was empty or contained only whitespace.  This entire file has been ignored.
(3/4) Updating icon theme caches...
(4/4) Updating the desktop file MIME type cache...

PS Now running on latest BIOS.

running in ssh session

$ mate-terminal
mate-terminal: error while loading shared libraries: /usr/lib/libvte-2.91.so.0: file too short

So tried same for xfce4-terminal

$ xfce4-terminal
xfce4-terminal: error while loading shared libraries: /usr/lib/libgtk-layer-shell.so.0: file too short

Should give a Gtk-WARNing cannot open display from an ssh session.

[cscs]

Yeah that all looks like problems.

Ok … lets manually do what one of the pacnews would have done and remove [community] from /etc/pacman.conf

You can optionally comment it out using #, ex:

#[community]
#SigLevel = PackageRequired
#Include = /etc/pacman.d/mirrorlist

Once that is done please perform (removing package cache optional, but yes to unused repos)

sudo pacman -Sc

Then sync/update again

sudo pacman -Syu

(this should look normal, with the [community] part gone)

But probably not fix the issue.

Those file errors come from various packages including xfsprogs,xapp, gtk-layer-shell …

So…

Lets reuse mapare.

After reviewing your previous output … I am not sure it is being run in the correct system, or there is some other problem trying to load it through ssh, as the command should have resulted in reinstalls of all existing packages (plus installs of anything missing).

Example on my kde system

$ ./mapare -IA

 Manjaro Package Restore

 Retrieve and reinstall package lists

 Please provide desktop environment (kde,xfce,gnome): kde

:: Synchronizing package databases...
 core is up to date
 extra is up to date
 multilib is up to date
warning: base-3-2 is up to date -- reinstalling
warning: acpi-1.7-3 is up to date -- reinstalling
warning: acpid-2.0.34-1 is up to date -- reinstalling
warning: amd-ucode-20231211.f2e52a1c-1 is up to date -- reinstalling
warning: bzip2-1.0.8-5 is up to date -- reinstalling
warning: coreutils-9.4-2 is up to date -- reinstalling
warning: cpupower-6.7-1 is up to date -- reinstalling
warning: cryptsetup-2.6.1-3.4 is up to date -- reinstalling
warning: device-mapper-2.03.22-2 is up to date -- reinstalling
warning: dhcpcd-10.0.6-1 is up to date -- reinstalling
warning: diffutils-3.10-1 is up to date -- reinstalling
warning: dmraid-1.0.0.rc16.3-14 is up to date -- reinstalling
warning: dosfstools-4.2-3 is up to date -- reinstalling
warning: e2fsprogs-1.47.0-1 is up to date -- reinstalling
warning: ecryptfs-utils-111-8 is up to date -- reinstalling
warning: efibootmgr-18-2 is up to date -- reinstalling
warning: exfatprogs-1.2.2-1 is up to date -- reinstalling
warning: f2fs-tools-1.16.0-2 is up to date -- reinstalling
warning: grub-2.12-3 is up to date -- reinstalling
warning: inetutils-2.5-1 is up to date -- reinstalling
warning: jfsutils-1.1.15-8 is up to date -- reinstalling
warning: linux61-6.1.71-1 is up to date -- reinstalling
warning: less-1:643-1 is up to date -- reinstalling
warning: logrotate-3.21.0-2 is up to date -- reinstalling
warning: lvm2-2.03.22-2 is up to date -- reinstalling
warning: man-db-2.12.0-1 is up to date -- reinstalling
warning: manjaro-release-23.1.2-1 is up to date -- reinstalling
warning: manjaro-system-20230401-1 is up to date -- reinstalling
warning: man-pages-6.05.01-2 is up to date -- reinstalling
warning: mdadm-4.2-2 is up to date -- reinstalling
warning: memtest86+-efi-6.20-1 is up to date -- reinstalling
warning: mhwd-0.6.5-28 is up to date -- reinstalling
warning: mhwd-db-0.6.5-28 is up to date -- reinstalling
warning: mkinitcpio-openswap-0.1.0-3 is up to date -- reinstalling
warning: nano-7.2-1 is up to date -- reinstalling
warning: nano-syntax-highlighting-2020.10.10+10+g1aa64a8-2 is up to date -- reinstalling
warning: nfs-utils-2.6.4-1 is up to date -- reinstalling
warning: ntfs-3g-2022.10.3-1 is up to date -- reinstalling
warning: os-prober-1.81-1 is up to date -- reinstalling
warning: perl-5.38.1-1 is up to date -- reinstalling
warning: reiserfsprogs-3.6.27-4 is up to date -- reinstalling
warning: rsync-3.2.7-6 is up to date -- reinstalling
warning: s-nail-14.9.24-2 is up to date -- reinstalling
warning: sof-firmware-2023.12-1 is up to date -- reinstalling
warning: spectre-meltdown-checker-0.46+20+g9b7b09a-1 is up to date -- reinstalling
warning: sudo-1.9.15.p4-1 is up to date -- reinstalling
warning: sysfsutils-2.1.1-1 is up to date -- reinstalling
warning: systemd-255.2-1 is up to date -- reinstalling
warning: texinfo-7.1-2 is up to date -- reinstalling
warning: update-grub-2.12-3 is up to date -- reinstalling
warning: usbutils-017-1 is up to date -- reinstalling
warning: vi-1:070224-6 is up to date -- reinstalling
warning: wget-1.21.4-1 is up to date -- reinstalling
warning: which-2.21-6 is up to date -- reinstalling
warning: wireless-regdb-2023.09.01-1 is up to date -- reinstalling
warning: wpa_supplicant-2:2.10-8 is up to date -- reinstalling
warning: linux61-headers-6.1.71-1 is up to date -- reinstalling
warning: libva-intel-driver-2.4.1-2 is up to date -- reinstalling
warning: libxaw-1.0.15-1 is up to date -- reinstalling
warning: libxpm-3.5.17-1 is up to date -- reinstalling
warning: gtkmm3-3.24.8-1 is up to date -- reinstalling
warning: xf86-video-amdgpu-23.0.0-1 is up to date -- reinstalling
warning: avahi-1:0.8+r194+g3f79789-1 is up to date -- reinstalling
warning: networkmanager-1.44.2-3 is up to date -- reinstalling
warning: networkmanager-openvpn-1.10.2-3 is up to date -- reinstalling
warning: networkmanager-pptp-1.2.12-3 is up to date -- reinstalling
warning: networkmanager-l2tp-1.20.10-1 is up to date -- reinstalling
warning: nss-mdns-0.15.1-1 is up to date -- reinstalling
warning: ntp-4.2.8.p17-1 is up to date -- reinstalling
warning: mobile-broadband-provider-info-20230416-1 is up to date -- reinstalling
warning: modemmanager-1.22.0-1 is up to date -- reinstalling
warning: openssh-9.6p1-1 is up to date -- reinstalling
warning: samba-4.19.3-2 is up to date -- reinstalling
warning: usb_modeswitch-2.6.1-3 is up to date -- reinstalling
warning: alsa-firmware-1.2.4-3 is up to date -- reinstalling
warning: alsa-utils-1.2.10-1 is up to date -- reinstalling
warning: ffmpeg-2:6.1.1-1 is up to date -- reinstalling
warning: gst-libav-1.22.8-2 is up to date -- reinstalling
warning: gst-plugins-bad-1.22.8-2 is up to date -- reinstalling
warning: gst-plugins-base-1.22.8-2 is up to date -- reinstalling
warning: gst-plugins-good-1.22.8-2 is up to date -- reinstalling
warning: gst-plugins-ugly-1.22.8-2 is up to date -- reinstalling
warning: libcanberra-1:0.30+r2+gc0620e4-3 is up to date -- reinstalling
warning: libdvdcss-1.4.3-1 is up to date -- reinstalling
warning: manjaro-alsa-20221002-1 is up to date -- reinstalling
warning: manjaro-pipewire-20231009-1 is up to date -- reinstalling
warning: phonon-qt5-gstreamer-4.10.0-4 is up to date -- reinstalling
warning: kamera-23.08.4-1 is up to date -- reinstalling
warning: mtpfs-1.1-4 is up to date -- reinstalling
warning: udiskie-2.5.1-1 is up to date -- reinstalling
warning: udisks2-2.10.1-2 is up to date -- reinstalling
warning: ttf-dejavu-2.37+18+g9b5d1b2f-6 is up to date -- reinstalling
warning: noto-fonts-1:24.1.1-1 is up to date -- reinstalling
warning: adobe-source-sans-fonts-3.052-1 is up to date -- reinstalling
warning: adobe-source-han-sans-jp-fonts-2.004-1 is up to date -- reinstalling
warning: adobe-source-han-sans-kr-fonts-2.004-1 is up to date -- reinstalling
warning: adobe-source-han-sans-cn-fonts-2.004-1 is up to date -- reinstalling
warning: terminus-font-4.49.1-6 is up to date -- reinstalling
warning: sddm-kcm-5.27.10-1 is up to date -- reinstalling
warning: audiocd-kio-23.08.4-1 is up to date -- reinstalling
warning: bluedevil-1:5.27.10-1 is up to date -- reinstalling
warning: kde-gtk-config-5.27.10-1 is up to date -- reinstalling
warning: kdeplasma-addons-5.27.10-2 is up to date -- reinstalling
warning: kgamma-5.27.10-2 is up to date -- reinstalling
warning: kinfocenter-5.27.10-1 is up to date -- reinstalling
warning: kmenuedit-5.27.10-1 is up to date -- reinstalling
warning: kscreen-5.27.10-1 is up to date -- reinstalling
warning: kscreenlocker-5.27.10-1 is up to date -- reinstalling
warning: ksshaskpass-5.27.10-1 is up to date -- reinstalling
warning: ksysguard-5.22.0-2 is up to date -- reinstalling
warning: kwallet-pam-5.27.10-1 is up to date -- reinstalling
warning: kwayland-integration-5.27.10-1 is up to date -- reinstalling
warning: kwin-5.27.10-2 is up to date -- reinstalling
warning: qt5-virtualkeyboard-5.15.12-1 is up to date -- reinstalling
warning: kwrited-5.27.10-1 is up to date -- reinstalling
warning: milou-5.27.10-1 is up to date -- reinstalling
warning: plasma-desktop-5.27.10-1 is up to date -- reinstalling
warning: plasma-nm-5.27.10-1 is up to date -- reinstalling
warning: plasma-pa-5.27.10-1 is up to date -- reinstalling
warning: plasma-simplemenu-1.0.12-1 is up to date -- reinstalling
warning: plasma-wayland-session-5.27.10-2 is up to date -- reinstalling
warning: plasma-workspace-5.27.10-2 is up to date -- reinstalling
warning: powerdevil-5.27.10-1 is up to date -- reinstalling
warning: systemsettings-5.27.10-1 is up to date -- reinstalling
warning: plasma-browser-integration-5.27.10-1 is up to date -- reinstalling
warning: xdg-desktop-portal-kde-5.27.10-1 is up to date -- reinstalling
warning: plasma-thunderbolt-5.27.10-1 is up to date -- reinstalling
warning: gnome-themes-extra-3.28+r6+g45b1d457-1 is up to date -- reinstalling
warning: oxygen-5.27.10-1 is up to date -- reinstalling
warning: oxygen-icons-1:5.113.0-1 is up to date -- reinstalling
warning: sddm-breath-theme-23.0.0-1 is up to date -- reinstalling
warning: grub-theme-manjaro-20.2-16 is up to date -- reinstalling
warning: breeze-gtk-5.27.10-1 is up to date -- reinstalling
warning: ark-23.08.4-1 is up to date -- reinstalling
warning: dolphin-23.08.4-1 is up to date -- reinstalling
warning: dolphin-plugins-23.08.4-1 is up to date -- reinstalling
warning: kate-23.08.4-1 is up to date -- reinstalling
warning: kcalc-23.08.4-1 is up to date -- reinstalling
warning: kfind-23.08.4-1 is up to date -- reinstalling
warning: okular-23.08.4-1 is up to date -- reinstalling
warning: kdenetwork-filesharing-23.08.4-1 is up to date -- reinstalling
warning: khelpcenter-23.08.4-1 is up to date -- reinstalling
warning: khotkeys-5.27.10-1 is up to date -- reinstalling
warning: kinit-5.113.0-1 is up to date -- reinstalling
warning: kio-extras-23.08.4-1 is up to date -- reinstalling
warning: konsole-23.08.4-2 is up to date -- reinstalling
warning: ksystemlog-23.08.4-1 is up to date -- reinstalling
warning: kwalletmanager-23.08.4-1 is up to date -- reinstalling
warning: gwenview-23.08.4-1 is up to date -- reinstalling
warning: partitionmanager-23.08.4-1 is up to date -- reinstalling
warning: spectacle-23.08.4-1 is up to date -- reinstalling
warning: unarchiver-1.10.8-1 is up to date -- reinstalling
warning: kdegraphics-thumbnailers-23.08.4-1 is up to date -- reinstalling
warning: ffmpegthumbs-23.08.4-1 is up to date -- reinstalling
warning: kimageformats5-5.113.0-1 is up to date -- reinstalling
warning: qt5-imageformats-5.15.12+kde+r10-1 is up to date -- reinstalling
warning: sshfs-3.7.3-1 is up to date -- reinstalling
warning: poppler-data-0.4.12-1 is up to date -- reinstalling
warning: dmidecode-3.5-1 is up to date -- reinstalling
warning: htop-3.2.2-1 is up to date -- reinstalling
warning: inxi-3.3.31.2-1 is up to date -- reinstalling
warning: manjaro-settings-manager-kcm-0.5.7-21 is up to date -- reinstalling
warning: plasma-systemmonitor-5.27.10-1 is up to date -- reinstalling
warning: powertop-2.15-1 is up to date -- reinstalling
warning: systemd-kcm-1.2.1-8 is up to date -- reinstalling
warning: xf86-input-elographics-1.4.3-1 is up to date -- reinstalling
warning: xf86-input-evdev-2.10.6-3 is up to date -- reinstalling
warning: xf86-input-libinput-1.4.0-1 is up to date -- reinstalling
warning: xf86-input-void-1.4.2-1 is up to date -- reinstalling
warning: mesa-utils-9.0.0-3 is up to date -- reinstalling
warning: numlockx-1.2-5 is up to date -- reinstalling
warning: xdg-user-dirs-0.18-1 is up to date -- reinstalling
warning: xorg-server-21.1.10-1 is up to date -- reinstalling
warning: xorg-twm-1.0.12-1 is up to date -- reinstalling
warning: xorg-xinit-1.4.2-1 is up to date -- reinstalling
warning: xorg-xkill-1.0.6-1 is up to date -- reinstalling
warning: xorg-mkfontscale-1.2.2-1 is up to date -- reinstalling
warning: perl-file-mimeinfo-0.34-1 is up to date -- reinstalling
warning: xdg-utils-1.2.0r25+g0f49cf5-1 is up to date -- reinstalling
warning: manjaro-hotfixes-2018.08-6 is up to date -- reinstalling

So heres the remote string again

bash <(curl -s https://gitlab.com/cscs/mapare/-/raw/main/mapare) -IA

But we might want to download it and run it, ex:

curl -O https://gitlab.com/cscs/mapare/-/raw/main/mapare
chmod +x mapare
./mapare -IA

(again input your DE xfce)

I would hope for the reinstalls to work … but with all of the file problems you have you might want to go nuclear.

./mapare -IA --overwrite

The mapare --overwrite flag should pass the --overwrite '*' to pacman.
Normally we would avoid this … but it appears you have many random packages with various fragmentations.

PS. I totally neglected to incorporate mirrors into our checks.
With the system being out of date for some time it only stands to reason the mirror could be old/bad as well.

Heres a sort and sync

sudo pacman-mirrors -f && sudo pacman -Syu

If for whatever reason its stuck on a stale custom mirror pool you can reset it with

sudo pacman-mirrors -c all && sudo pacman -Syu

(mirror status page link: https://repo.manjaro.org/)

[RonaldDuncan]

@cscs

./mapare -IA --overwrite

Thanks,
Got the following error

./mapare -IA --overwrite

 Manjaro Package Restore

 Retrieve and reinstall package lists

 Please provide desktop environment (kde,xfce,gnome): xfce
./mapare: illegal option -- -
 Options:

  -h to show this help

  -I to install missing packages (--needed by default)

 Install options (require -I):

  -A to install the entire package list
  -D to limit package list to desktop profile
  -E to mark packages as explicitly installed
  -P to only print the package list
  -R to reinstall system packages

  Use the additional --overwrite flag to overwrite existing files.
  (Use With Caution)

Going to have a look at the script to see if I can find the problem.

Updated script to create a version with overwrite as default, but it did not do anything.

:: Starting full system upgrade...
 there is nothing to do

Could not get it to work so went for a full reinstall of everything with overwrite.
sudo pacman -Syu $(pacman -Qnq) --overwrite '*'

Unfortunately machine crashed at point
(11/43) Updating module dependencies…

And no longer boots due to an image authorisation security Violation

[cscs]

Sad days.
I was just coming back to say I found and wrangled the bug.
(simply was the first getopts loop interpreting the long option, which it does not support)
Its fixed and updated for the future though. So thats something.

I am not sure what your exact error there is.
I suppose we hope it can be accessible via a “Fallback” boot option or … at the very least a Live ISO and a chroot (or manjaro-chroot).

Heres some basics:

[HowTo] Resolve an unbootable Manjaro (black screen, login failed, cant boot, etc)

When we have problems gaining access to our systems it is difficult to gather information, let alone fix any problems. Here we will cover common causes and solutions to ‘manjaro wont boot’. TTY If your desktop does not load properly then you might still be able to use most, if not all, functionality by dropping to a non-graphical TTY. By default your system will have multiple TTYs, with each corresponding to an Fx key. Your desktop is assigned to one as well - most often F1. You can chang…

[RonaldDuncan]

@RonaldDuncan

sudo pacman -Syu $(pacman -Qnq) --overwrite ‘*’

Thanks,
Two problems updating the bios turned on secure boot. Went in and turned it off.

Other problem was the crash whilst updating all the packages. Just trying to unlock pacman and try again from a local tty rather than doing it remotely.

Crash has taken out NetworkManager, so going to reinstall after I get another PC working.

Joy of Joys the replacement PC does not support the monitor resolution.