In my case, just fixing the polkit-agent-helper SUID permissions wasn’t enough. I did it with:
sudo chmod 4755 /usr/lib/polkit-1/polkit-agent-helper-1
But I also had to mask the polkit-agent-helper socket:
sudo systemctl stop polkit-agent-helper.socket
sudo systemctl mask polkit-agent-helper.socket
Otherwise, the problem persists.
Cheers and thanks a lot.