I create a new VM for testing and grabbed info from both the ISO and the installed OS.
After install and while still in the ISO, the Calameras log still shows that it removes, in this case, the intel-ucode package just before completing the install. So if I was to guess, the issue seems to be in Calamares, in that it should not be removing the package because GRUB has an entry for both.
ISO - sudo cat /etc/mkinitcpio.conf
DeLinuxCo manjaro ~ sudo cat /etc/default/grub
GRUB_DEFAULT=saved
GRUB_TIMEOUT=5
GRUB_DISTRIBUTOR="Manjaro"
GRUB_CMDLINE_LINUX_DEFAULT=""
GRUB_CMDLINE_LINUX=""
# If you want to enable the save default function, uncomment the following
# line, and set GRUB_DEFAULT to saved.
GRUB_SAVEDEFAULT=true
# Preload both GPT and MBR modules so that they are not missed
GRUB_PRELOAD_MODULES="part_gpt part_msdos"
# Uncomment to enable Hidden Menu, and optionally hide the timeout count
#GRUB_HIDDEN_TIMEOUT=5
#GRUB_HIDDEN_TIMEOUT_QUIET=true
# Uncomment to use basic console
GRUB_TERMINAL_INPUT=console
# Uncomment to disable graphical terminal
#GRUB_TERMINAL_OUTPUT=console
# The resolution used on graphical terminal
# note that you can use only modes which your graphic card supports via VBE
# you can see them in real GRUB with the command `vbeinfo'
GRUB_GFXMODE=auto
# Uncomment to allow the kernel use the same resolution used by grub
GRUB_GFXPAYLOAD_LINUX=keep
# Uncomment if you want GRUB to pass to the Linux kernel the old parameter
# format "root=/dev/xxx" instead of "root=/dev/disk/by-uuid/xxx"
#GRUB_DISABLE_LINUX_UUID=true
# Uncomment to disable generation of recovery mode menu entries
GRUB_DISABLE_RECOVERY=true
# Uncomment and set to the desired menu colors. Used by normal and wallpaper
# modes only. Entries specified as foreground/background.
GRUB_COLOR_NORMAL="light-gray/black"
GRUB_COLOR_HIGHLIGHT="green/black"
# Uncomment one of them for the gfx desired, a image background or a gfxtheme
#GRUB_BACKGROUND="/usr/share/grub/background.png"
#GRUB_THEME="/path/to/gfxtheme"
# Uncomment to get a beep at GRUB start
#GRUB_INIT_TUNE="480 440 1"
ISO - sudo cat /etc/mkinitcpio.conf
# vim:set ft=sh
# MODULES
# The following modules are loaded before any boot hooks are
# run. Advanced users may wish to specify all system modules
# in this array. For instance:
# MODULES=(qxl bochs_drm virtio-gpu virtio virtio_scsi virtio_blk virtio_pci virtio_net virtio_ring)
MODULES=(qxl bochs_drm virtio-gpu virtio virtio_scsi virtio_blk virtio_pci virtio_net virtio_ring)
# BINARIES
# This setting includes any additional binaries a given user may
# wish into the CPIO image. This is run last, so it may be used to
# override the actual binaries included by a given hook
# BINARIES are dependency parsed, so you may safely ignore libraries
BINARIES=()
# FILES
# This setting is similar to BINARIES above, however, files are added
# as-is and are not parsed in any way. This is useful for config files.
FILES=()
# HOOKS
# This is the most important setting in this file. The HOOKS control the
# modules and scripts added to the image, and what happens at boot time.
# Order is important, and it is recommended that you do not change the
# order in which HOOKS are added. Run 'mkinitcpio -H <hook name>' for
# help on a given hook.
# 'base' is _required_ unless you know precisely what you are doing.
# 'udev' is _required_ in order to automatically load modules
# 'filesystems' is _required_ unless you specify your fs modules in MODULES
# Examples:
## This setup specifies all modules in the MODULES setting above.
## No RAID, lvm2, or encrypted root is needed.
# HOOKS=(base)
#
## This setup will autodetect all modules for your system and should
## work as a sane default
# HOOKS=(base udev autodetect modconf block filesystems fsck)
#
## This setup will generate a 'full' image which supports most systems.
## No autodetection is done.
# HOOKS=(base udev modconf block filesystems fsck)
#
## This setup assembles a mdadm array with an encrypted root file system.
## Note: See 'mkinitcpio -H mdadm_udev' for more information on RAID devices.
# HOOKS=(base udev modconf keyboard keymap consolefont block mdadm_udev encrypt filesystems fsck)
#
## This setup loads an lvm2 volume group.
# HOOKS=(base udev modconf block lvm2 filesystems fsck)
#
## NOTE: If you have /usr on a separate partition, you MUST include the
# usr and fsck hooks.
HOOKS=(base udev autodetect modconf kms keyboard keymap consolefont block filesystems fsck)
# COMPRESSION
# Use this to compress the initramfs image. By default, gzip compression
# is used. Use 'cat' to create an uncompressed image.
#COMPRESSION="gzip"
#COMPRESSION="bzip2"
#COMPRESSION="lzma"
#COMPRESSION="xz"
#COMPRESSION="lzop"
#COMPRESSION="lz4"
#COMPRESSION="zstd"
# COMPRESSION_OPTIONS
# Additional options for the compressor
#COMPRESSION_OPTIONS=()
# MODULES_DECOMPRESS
# Decompress kernel modules during initramfs creation.
# Enable to speedup boot process, disable to save RAM
# during early userspace. Switch (yes/no).
#MODULES_DECOMPRESS="yes"
VM-INSTALL: sudo cat /etc/default/grub
GRUB_DEFAULT=saved
GRUB_TIMEOUT=5
GRUB_TIMEOUT_STYLE=hidden
GRUB_DISTRIBUTOR='Manjaro'
GRUB_CMDLINE_LINUX_DEFAULT='quiet apparmor=1 security=apparmor resume=UUID=1fd36758-9bd1-4fa9-8939-7f9d591692c7 udev.log_priority=3'
GRUB_CMDLINE_LINUX=""
# If you want to enable the save default function, uncomment the following
# line, and set GRUB_DEFAULT to saved.
GRUB_SAVEDEFAULT=true
# Preload both GPT and MBR modules so that they are not missed
GRUB_PRELOAD_MODULES="part_gpt part_msdos"
# Uncomment to enable booting from LUKS encrypted devices
#GRUB_ENABLE_CRYPTODISK=y
# Uncomment to use basic console
GRUB_TERMINAL_INPUT=console
# Uncomment to disable graphical terminal
#GRUB_TERMINAL_OUTPUT=console
# The resolution used on graphical terminal
# note that you can use only modes which your graphic card supports via VBE
# you can see them in real GRUB with the command 'videoinfo'
GRUB_GFXMODE=auto
# Uncomment to allow the kernel use the same resolution used by grub
GRUB_GFXPAYLOAD_LINUX=keep
# Uncomment if you want GRUB to pass to the Linux kernel the old parameter
# format "root=/dev/xxx" instead of "root=/dev/disk/by-uuid/xxx"
#GRUB_DISABLE_LINUX_UUID=true
# Uncomment to disable generation of recovery mode menu entries
GRUB_DISABLE_RECOVERY=true
# Uncomment this option to enable os-prober execution in the grub-mkconfig command
GRUB_DISABLE_OS_PROBER=false
# Uncomment and set to the desired menu colors. Used by normal and wallpaper
# modes only. Entries specified as foreground/background.
GRUB_COLOR_NORMAL="light-gray/black"
GRUB_COLOR_HIGHLIGHT="green/black"
# Uncomment one of them for the gfx desired, a image background or a gfxtheme
#GRUB_BACKGROUND="/usr/share/grub/background.png"
#GRUB_THEME="/path/to/gfxtheme"
# Uncomment to get a beep at GRUB start
#GRUB_INIT_TUNE="480 440 1"
# Uncomment to ensure that the root filesystem is mounted read-only so that
# systemd-fsck can run the check automatically. We use 'fsck' by default, which
# needs 'rw' as boot parameter, to avoid delay in boot-time. 'fsck' needs to be
# removed from 'mkinitcpio.conf' to make 'systemd-fsck' work.
# See also Arch-Wiki: https://wiki.archlinux.org/index.php/Fsck#Boot_time_checking
#GRUB_ROOT_FS_RO=true
VM-INSTALL: sudo cat /etc/mkinitcpio.conf
# vim:set ft=sh
# MODULES
# The following modules are loaded before any boot hooks are
# run. Advanced users may wish to specify all system modules
# in this array. For instance:
# MODULES=(qxl bochs_drm virtio-gpu virtio virtio_scsi virtio_blk virtio_pci virtio_net virtio_ring)
MODULES=(qxl bochs_drm virtio-gpu virtio virtio_scsi virtio_blk virtio_pci virtio_net virtio_ring)
# BINARIES
# This setting includes any additional binaries a given user may
# wish into the CPIO image. This is run last, so it may be used to
# override the actual binaries included by a given hook
# BINARIES are dependency parsed, so you may safely ignore libraries
BINARIES=()
# FILES
# This setting is similar to BINARIES above, however, files are added
# as-is and are not parsed in any way. This is useful for config files.
FILES=()
# HOOKS
# This is the most important setting in this file. The HOOKS control the
# modules and scripts added to the image, and what happens at boot time.
# Order is important, and it is recommended that you do not change the
# order in which HOOKS are added. Run 'mkinitcpio -H <hook name>' for
# help on a given hook.
# 'base' is _required_ unless you know precisely what you are doing.
# 'udev' is _required_ in order to automatically load modules
# 'filesystems' is _required_ unless you specify your fs modules in MODULES
# Examples:
## This setup specifies all modules in the MODULES setting above.
## No RAID, lvm2, or encrypted root is needed.
# HOOKS=(base)
#
## This setup will autodetect all modules for your system and should
## work as a sane default
# HOOKS=(base udev autodetect modconf block filesystems fsck)
#
## This setup will generate a 'full' image which supports most systems.
## No autodetection is done.
# HOOKS=(base udev modconf block filesystems fsck)
#
## This setup assembles a mdadm array with an encrypted root file system.
## Note: See 'mkinitcpio -H mdadm_udev' for more information on RAID devices.
# HOOKS=(base udev modconf keyboard keymap consolefont block mdadm_udev encrypt filesystems fsck)
#
## This setup loads an lvm2 volume group.
# HOOKS=(base udev modconf block lvm2 filesystems fsck)
#
## NOTE: If you have /usr on a separate partition, you MUST include the
# usr and fsck hooks.
HOOKS=(base udev autodetect kms modconf block keyboard keymap consolefont resume filesystems fsck)
# COMPRESSION
# Use this to compress the initramfs image. By default, gzip compression
# is used. Use 'cat' to create an uncompressed image.
#COMPRESSION="gzip"
#COMPRESSION="bzip2"
#COMPRESSION="lzma"
#COMPRESSION="xz"
#COMPRESSION="lzop"
#COMPRESSION="lz4"
#COMPRESSION="zstd"
# COMPRESSION_OPTIONS
# Additional options for the compressor
#COMPRESSION_OPTIONS=()
# MODULES_DECOMPRESS
# Decompress kernel modules during initramfs creation.
# Enable to speedup boot process, disable to save RAM
# during early userspace. Switch (yes/no).
#MODULES_DECOMPRESS="yes"
